Googel Scholar: goo.gl/jQiUt8

Selected Publications [#student supervised (undergrad underlined) | †equal contributor | ​*corresponding author]
 ​​
Antibiotic Resistance and Environmental Health

1. You Y, Song L, Nonyane BAS, Price LB, Silbergeld EK. Genomic differences between nasal Staphylococcus aureus from hog slaughterhouse workers and their communities. PLoS ONE 2018, 13(3), e0193820. DOI:10.1371/journal.pone.0193820
2. Richter TS, Hazen TH, Lam D, Coles CL, Seidman JC, You Y, Silbergeld EK, Fraser CM, Rasko DA. Temporal variability of Escherichia coli diversity in the gastrointestinal tracts of Tanzanian children with and without exposure to antibiotics. mSphere 2018, 3(6): e00558-18. DOI:10.1128/mSphere.00558-18
   ​Editor's Pick by PLoS Channels Antibiotic Resistance: https://channels.plos.org/amr
3. You Y, Silbergeld EK. Learning from agriculture: understanding low-dose antimicrobials as drivers of resistome expansion. Frontiers in Microbiology 2014, 5, 284. DOI:10.3389/fmicb.2014.00284
4. Neyra RC, Frisancho JA, Resnick C, Carroll KC, Rinsky JL, You Y, Price LB, Silbergeld EK. Multidrug-resistant and methicillin-resistant Staphylococcus aureus (MRSA) in hog slaughter and processing plant workers and their community in North Carolina (USA). Environmental Health Perspectives 2014, 122(5), 471-477. DOI:10.1289/ehp.1306741
5. ​You Y*, Hilpert M, Ward WJ. Detection of a common and persistent tet(L)-carrying plasmid in chicken-waste-impacted farm soil. Applied and Environmental Microbiology 2012, 78(9), 3203-3213. DOI:10.1128/AEM.07763-11
   ​

Sustainable Food-Energy-Water Nexus

1. Kerner P#, Struhs E#, Mirkouei A, Aho K, Lohse KA, Dungan R, You Y*. Microbial Responses to Biochar Soil Amendment: A Three-level Meta-analysis. Under review. bioRxiv, 2023. DOI:10.1101/2023.06.02.543269
2. Wahlen BD, Wendt LM, St. Germain CC, Traynor SM, Barboza C, Dempster T, Gerken H, McGowen J, You Y. Effect of nitrogen management in cultivation on the stability and microbial community of post-harvest Monoraphidium sp. algae biomass. Journal of Industrial Microbiology and Biotechnology 2023. DOI:10.1093/jimb/kuad004
3. Struhs E#, Mirkouei A, You Y, Mohajeri A. Techno-economic and environmental assessments for nutrient-rich biochar production from cattle manure: A case study in Idaho, USA. Applied Energy 2020, 279, 115782. DOI:10.1016/j.apenergy.2020.115782
4. Lin L#, You Y, Pagilla K. Density-based separation of microbial functional groups in activated sludge. Journal of Environmental Research and Public Health 2020, 17(1), 376. DOI:10.3390/ijerph17010376
5. Hersh B, Mirkouei A, Sessions J, Rezaie B, You Y. A review and future directions on enhancing sustainability benefits across food-energy-water systems: The potential role of biochar-derived products. AIMS Environmental Science 2019, 6(5): 379-416. DOI:10.3934/environsci.2019.5.379

 
Engineered Nanomaterials​​​​

1. You Y*, Kerner P#, Shanmugam S, Khodakovskaya M. Differential effects of carbon nanotube and graphene on the tomato rhizosphere microbiome. Environmental Science: Nano 2023.​ DOI:10.1039/D2EN01026G
   Emerging Investigator Series–Environmental Science: Nano
   ​Inside Front Cover Article
2. Wu F, You Y, Werner D, Jiao S, Hu J, Zhang X, Wan Y, Liu J, Wang B, Wang X. Carbon nanomaterials affect carbon cycle-related functions of the soil microbial community and the coupling of nutrient cycles. Journal of Hazardous Materials 2020, 390, 122144. DOI:10.1016/j.jhazmat.2020.122144
3. Wu F, You Y, Zhang X, Zhang H, Chen W, Yang Y, Werner D, Tao S, Wang X. Effects of various carbon nanotubes on soil bacterial community composition and structure. Environmental Science & Technology 2019, 53(10), 5707-5716. DOI:10.1021/acs.est.8b06909
4. Das KK#, You Y*, Torres M, Barrios-Masias F, Wang X, Tao S, Xing B, Yang Y. Development and application of a digestion-Raman analysis approach for studying multiwalled carbon nanotube uptake in lettuce. Environmental Science: Nano 2018, 5, 659-668.​ DOI:10.1039/C7EN01047H
   Best Papers 2018–Environmental Science: Nano
   ​Back Cover Article
5. You Y*, Das KK#, Guo H, Chang C-W, Navas-Moreno M, Chan J, Verburg P, Poulson SR, Wang X, Xing B, Yang Y. Microbial transformation of multiwalled carbon nanotubes by Mycobacterium vanbaalenii PYR-1. Environmental Science & Technology 2017, 51(4), 2068-2076. DOI:10.1021/acs.est.6b04523

​
​Geomicrobiology & Biogeochemistry

1. Aho K, Kriloff C, Godsey SE, Ramos R, Wheeler C, You Y, Warix S, Derryberry D, Zipper S, Hale RL. Non-perennial stream networks as directed acyclic graphs: The R-package streamDAG. In revision. EarthArXiv, 2023. DOI:10.31223/X5K949
2. Ahamed F, You Y, Burgin A, Stegen JC, Scheibe TD, Song H. Exploring the determinants of organic matter bioavailability through substrate-explicit modeling. Frontiers in Water 2023. DOI:10.3389/frwa.2023.1169701
3. Borton MA, Collins SM, Graham EB, Garayburu-Caruso VA, Goldman AE, de Melo ML, Renteria L, Stegen JC, Crowdsourced Consortium. It takes a village: using a crowdsourced approach to investigate organic matter composition in global rivers through the lens of ecological theory. Frontiers in Water 2022, 4, 870453. DOI:10.3389/frwa.2022.870453
4. You Y*, Aho K, Lohse KA, Schwabedissen SG, Ledbetter RN, Magnuson TS. Biological soil crust bacterial communities and concomitant N-cycling traits vary along climatic and shrub cover gradients within a sagebrush steppe ecosystem. Frontiers in Microbiology 2021, 12, 56979. DOI:10.3389/fmicb.2021.569791
5. Dunham-Cheatham S, You Y†*. General Geochemistry and Microbiology Techniques. In Analytical Geomicrobiology: A Handbook of Instrumental Techniques, JPL Kenney, H Veeramani & DS Alessi (eds), Cambridge University Press, 2019. ISBN:9781107070332